Publications

What we know



2023 // Cell Systems — Samineni, L. et. al

Protein engineering of pores for separation, sensing, and sequencing

Article 

2023 // Journal of Experimental Botany — Choi, S. et. al

A single amino acid change led to structural and functional differentiation of PvHd1 to control flowering in switchgrass

Article 

2023 // Metabolic Engineering — Jindra, M. et. al

Evaluation of strategies to narrow the product chain-length distribution of microbially synthesized free fatty acids

Article 

2023 // Frontiers in Bioeng. and Biotech — Chowdhury, R.

Advances in protein structure, function, and design

Article 

2021 // Nature Biotechnology — Chowdhury,R. + Bouatta,N. + Biswas,S. et. al

Single-sequence protein structure prediction using language models from deep learning

Article  Nature News |ScienceMag | Forbes AI

2022 // Proteins — Boorla,VS. + Chowdhury,R. et. al

De novo design and Rosetta-based assessment of high-affinity antibody variable regions (Fv) against the SARS-CoV-2 spike receptor binding domain (RBD)

Article

2022 // NPJ Clear Water — Samineni, L. et. al

Effective pathogen removal in sustainable natural fiber Moringa filters

Article

2022 // Applied & Environmental Microbiology — Oh,C. + Chowdhury,R. et. al

Inactivation mechanism and efficacy of grape seed extract for Human Norovirus surrogate

Article

2021 // Genome Medicine — Patiño-Galindo, J. et. al

Recombination and lineage-specific mutations linked to the emergence of SARS-CoV-2

Article  The Scientist

2021 // Nature Nanotechnology — Zeng, H. et. al

Foldamer-based ultrapermeable and highly selective artificial water channels that exclude protons

Article  ScienMag | SciTech Daily

2021 // PNAS — Chen, C. et. al

Computational prediction of the effect of amino acid changes on the binding affinity between SARS-CoV-2 spike RBD and human ACE2

Article  News18 | LabRoots

2020 // Computational and Structural Biotechnology Journal — Chowdhury, R. + Boorla, VS. et. al

Computational biophysical characterization of the SARS-CoV-2 spike protein binding with the ACE2 receptor and implications for infectivity

Article  ScienceDaily

2020 // Structure — Chowdhury, R. et. al

IPRO+/−: Computational Protein Design Tool Allowing for Insertions and Deletions

Article 

2020 // Nature Nanotechnology — Song, W. et. al

Artificial water channels enable fast and selective water permeation through water-wire networks

Article  Nature | UT Austin | Water Canada

2020 // Protein Engineering, Design and Selection — Wang, Z. et. al

Engineering sensitivity and specificity of AraC-based biosensors responsive to triacetic acid lactone and orsellinic acid

Article

2020 // Nature Materials — Tu, YM. et. al

Rapid fabrication of precise high-throughput filters from membrane protein nanosheets

Article  Technology Networks | Science Daily

2019 // ACS Chemical Biology — Throckmorton, K. et. al

Directed Evolution Reveals the Functional Sequence Space of an Adenylation Domain Specificity Code

Article

2019 // AIChE Journal — Chowdhury, R. & Maranas, CD.

From directed evolution to computational enzyme engineering—A review

Article  Official EU policy document

2019 // Environmental Science & Technology — Samineni, L. et. al

7 log virus removal in a simple functionalized sand filter

Article  c&en

2019 // US Patent App. 16/397,416 — Chowdhury, R. et. al

Angstrom-scale separations by design using precision biomimetic membrane

Patent

2018 // Antibodies — Chowdhury, R. + Alan, MF. et. al

OptMAVEn-2.0: De novo Design of Variable Antibody Regions Against Targeted Antigen Epitopes

Article

2018 // Biophysical Journal — Chowdhury, R. et. al

Biomimetic Membrane Design Principles for Angstrom Scale Separation

Article

2018 // ACS Synthetic Biology — Hernández Lozada, N. et. al

Highly Active C8-Acyl-ACP Thioesterase Variant Isolated by a Synthetic Selection Strategy

Article

2018 // Nature Communications — Chowdhury, R. et. al

PoreDesigner for tuning solute selectivity in a robust and highly permeable outer membrane pore

Article  Penn State | Phys.Org

2017 // Frontiers in Immunology — Tiller, KE. et. al

Facile affinity maturation of antibody variable domains using natural diversity mutagenesis

Article

2015 // Metabolites — Chowdhury, R. et. al

Using gene essentiality and synthetic lethality information to correct yeast and CHO cell genome-scale models

Article

2014 // RSC Advances — Sarkar, S. et. al

Application of ANFIS model to optimise the photocatalytic degradation of chlorhexidine digluconate

Article

2014 // Renewable and Sustainable Energy Reviews — Chakraborty, R. et. al

Conversion of slaughterhouse and poultry farm animal fats and wastes to biodiesel: Parametric sensitivity and fuel quality assessment

Article

2013 // International Journal of Theoretical Physics — Chowdhury, R. et. al

Interacting Generalized Cosmic Chaplygin gas in Loop quantum cosmology: A singularity free universe

Article

2011 // International Journal of Theoretical Physics — Chowdhury, R. et. al

Influence of Gauss-Bonnet Coupling Parameter on the Thermodynamic Properties of Einstein-Gauss-Bonnet and Einstein-Yang-Mills-Gauss-Bonnet Black Holes

Article